Ebook: Life System Modeling and Simulation: International Conference, LSMS 2007, Shanghai, China, September 14-17, 2007. Proceedings

The International Conference on Life System Modeling and Simulation (LSMS) was formed to bring together international researchers and practitioners in the field of life system modeling and simulation as well as life system-inspired theory and methodology. The concept of a life system is quite broad. It covers both micro and macro c- ponents ranging from cells, tissues and organs across to organisms and ecologic niches. These interact and evolve to produce an overall complex system whose beh- ior is difficult to comprehend and predict. The arrival of the 21st century has been marked by a resurgence of research interest both in arriving at a systems-level und- standing of biology and in applying such knowledge in complex real-world appli- tions. Consequently, computational methods and intelligence in systems, biology, as well as bio-inspired computational intelligence, have emerged as key drivers for new computational methods. For this reason papers dealing with theory, techniques and real-world applications relating to these two themes were especially solicited. Building on the success of a previous workshop in 2004, the 2007 International Conference on Life System Modeling and Simulation (LSMS 2007) was held in Shanghai, China, September 14–17, 2007. The conference was jointly organized by The Shanghai University, Queen's University Belfast together with The Life System Modeling and Simulation Special Interest Committee of the Chinese Association for System Simulation.

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This book is part of a two-volume work that constitutes the refereed proceedings of the International Conference on Life System Modeling and Simulation, LSMS 2007, held in Shanghai, China, in September 2007.

The 147 revised full papers were carefully reviewed and selected from 1,383 submissions. The 63 papers in this volume are organized in topical sections on modeling and simulation of societies and collective behavior, computational methods and intelligence in biomechanical systems, tissue engineering and clinical bioengineering, computational intelligence in bioinformatics and biometrics, brain stimulation, neural dynamics and neural interfacing, biological and biomedical data integration, mining and visualization, computational methods and intelligence in organism modeling and biochemical networks and regulation, computational methods and intelligence in modeling of molecular, cellular, multi-cellular behavior and design of synthetic biological systems, and others.

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This book is part of a two-volume work that constitutes the refereed proceedings of the International Conference on Life System Modeling and Simulation, LSMS 2007, held in Shanghai, China, in September 2007.

The 147 revised full papers were carefully reviewed and selected from 1,383 submissions. The 63 papers in this volume are organized in topical sections on modeling and simulation of societies and collective behavior, computational methods and intelligence in biomechanical systems, tissue engineering and clinical bioengineering, computational intelligence in bioinformatics and biometrics, brain stimulation, neural dynamics and neural interfacing, biological and biomedical data integration, mining and visualization, computational methods and intelligence in organism modeling and biochemical networks and regulation, computational methods and intelligence in modeling of molecular, cellular, multi-cellular behavior and design of synthetic biological systems, and others.

Content:
Front Matter....Pages -
Phase Synchronization of Circadian Oscillators Induced by a Light-Dark Cycle and Extracellular Noise....Pages 1-7
Detecting RNA Sequences Using Two-Stage SVM Classifier....Pages 8-20
Frequency Synchronization of a Set of Cells Coupled by Quorum Sensing....Pages 21-27
A Stochastic Model for Prevention and Control of HIV/AIDS Transmission Dynamics....Pages 28-37
Simulation of Artificial Life of Bee’s Behaviors....Pages 38-45
Hybrid Processing and Time-Frequency Analysis of ECG Signal....Pages 46-57
Robust Stability of Human Balance Keeping....Pages 58-66
Modelling Pervasive Environments Using Bespoke and Commercial Game-Based Simulators....Pages 67-77
The Research of Artificial Animal’s Behavior Memory Based on Cognition....Pages 78-87
How to Ensure Safety Factors in the Development of Artificial Heart: Verified by the Usage of ”Modeling and Simulation” Technology....Pages 88-96
Parametric-Expression-Based Construction of Interior Features for Tissue Engineering Scaffold with Defect Bone....Pages 97-103
Computation of Uniaxial Modulus of the Normal and Degenerated Articular Cartilage Using Inhomogeneous Triphasic Model....Pages 104-110
Effect of the Plantar Ligaments Injury on the Longitudinal Arch Height of the Human Foot....Pages 111-119
Internet Living Broadcast of Medical Video Stream....Pages 120-128
Predicting Syndrome by NEI Specifications: A Comparison of Five Data Mining Algorithms in Coronary Heart Disease....Pages 129-135
Application of Image Processing and Finite Element Analysis in Bionic Scaffolds’ Design Optimizing and Fabrication....Pages 136-145
The Mechanical Properties of Bone Tissue Engineering Scaffold Fabricating Via Selective Laser Sintering....Pages 146-152
Informational Structure of Agrobacterium Tumefaciens C58 Genome....Pages 153-161
Feature Extraction for Cancer Classification Using Kernel-Based Methods....Pages 162-171
A New Hybrid Approach to Predict Subcellular Localization by Incorporating Protein Evolutionary Conservation Information....Pages 172-179
Support Vector Machine for Prediction of DNA-Binding Domains in Protein-DNA Complexes....Pages 180-187
Feature Extraction for Mass Spectrometry Data....Pages 188-196
An Improved Algorithm on Detecting Transcription and Translation Motif in Archaeal Genomic Sequences....Pages 197-207
Constructing Structural Alignment of RNA Sequences by Detecting and Assessing Conserved Stems....Pages 208-217
Iris Verification Using Wavelet Moments and Neural Network....Pages 218-226
Comprehensive Fuzzy Evaluation Model for Body Physical Exercise Risk....Pages 227-235
The Effect of Map Information on Brain Activation During a Driving Task....Pages 236-245
Worm 5: Pseudo-organics Computer and Natural Live System....Pages 246-253
Comparisons of Chemical Synapses and Gap Junctions in the Stochastic Dynamics of Coupled Neurons....Pages 254-263
Distinguish Different Acupuncture Manipulations by Using Idea of ISI....Pages 264-273
The Study on Internet-Based Face Recognition System Using PCA and MMD....Pages 274-283
Simulation of Virtual Human’s Mental State in Behavior Animation....Pages 284-291
Hemodynamic Analysis of Cerebral Aneurysm and Stenosed Carotid Bifurcation Using Computational Fluid Dynamics Technique....Pages 292-299
Active/Inactive Emotional Switching for Thinking Chain Extraction by Type Matching from RAS....Pages 300-306
Pattern Recognition for Brain-Computer Interfaces by Combining Support Vector Machine with Adaptive Genetic Algorithm....Pages 307-316
Improved Locally Linear Embedding by Cognitive Geometry....Pages 317-325
Predicting the Free Calcium Oxide Content on the Basis of Rough Sets, Neural Networks and Data Fusion....Pages 326-334
Classification of Single Trial EEG Based on Cloud Model for Brain-Computer Interfaces....Pages 335-343
The Modified Self-organizing Fuzzy Neural Network Model for Adaptability Evaluation....Pages 344-353
Predicting Functional Protein-Protein Interactions Based on Computational Methods....Pages 354-363
The Chaos Model Analysis Based on Time-Varying Fractal Dimension....Pages 364-369
Bi-hierarchy Medical Image Registration Based on Steerable Pyramid Transform....Pages 370-379
A Multiagent Quantum Evolutionary Algorithm for Global Numerical Optimization....Pages 380-389
Developing and Optimizing a Finite Element Model of Phalange Using CT Images....Pages 390-398
Reverse Engineering Methodology in Broken Skull Surface Model Reconstruction....Pages 399-405
Identification and Application of Nonlinear Rheological Characteristics of Oilseed Based on Artificial Neural Networks....Pages 406-413
Prediction of Death Rate of Breast Cancer Induced from Average Microelement Absorption with Neural Network....Pages 414-421
An Adaptive Classifier Based on Artificial Immune Network....Pages 422-428
Investigation of a Hydrodynamic Performance of a Ventricular Assist Device After Its Long-Term Use in Clinical Application....Pages 429-435
QSAR and Molecular Docking Study of a Series of Combretastatin Analogues Tubulin Inhibitors....Pages 436-444
A Software Method to Model and Fabricate the Defective Bone Repair Bioscaffold Using in Tissue Engineering....Pages 445-452
Using Qualitative Technology for Modeling the Process of Virus Infection....Pages 453-461
AOC-by-Self-discovery Modeling and Simulation for HIV....Pages 462-469
A Simulation Study on the Encoding Mechanism of Retinal Ganglion Cell....Pages 470-479
Modelling the MAPK Signalling Pathway Using a Two-Stage Identification Algorithm....Pages 480-491
Design and Path Planning for a Remote-Brained Service Robot....Pages 492-500
Adaptive Fuzzy Sliding Mode Control of the Model of Aneurysms of the Circle of Willis....Pages 501-506
Particle Swarm Optimization Applied to Image Vector Quantization....Pages 507-515
Face Detection Based on BPNN and Wavelet Invariant Moment in Video Surveillance....Pages 516-525
Efficient Topological Reconstruction for Medical Model Based on Mesh Simplification....Pages 526-535
Repetitive Motion Planning of Redundant Robots Based on LVI-Based Primal-Dual Neural Network and PUMA560 Example....Pages 536-545
Tensile Test to Ensure a Safety of Cannula Connection in Clinical Ventricular Assist Device (VAD)....Pages 546-552
A Reproduction of Inflow Restriction in the Mock Circulatory System to Evaluate a Hydrodynamic Performance of a Ventricular Assist Device in Practical Conditions....Pages 553-558
Back Matter....Pages -

---

This book is part of a two-volume work that constitutes the refereed proceedings of the International Conference on Life System Modeling and Simulation, LSMS 2007, held in Shanghai, China, in September 2007.

The 147 revised full papers were carefully reviewed and selected from 1,383 submissions. The 63 papers in this volume are organized in topical sections on modeling and simulation of societies and collective behavior, computational methods and intelligence in biomechanical systems, tissue engineering and clinical bioengineering, computational intelligence in bioinformatics and biometrics, brain stimulation, neural dynamics and neural interfacing, biological and biomedical data integration, mining and visualization, computational methods and intelligence in organism modeling and biochemical networks and regulation, computational methods and intelligence in modeling of molecular, cellular, multi-cellular behavior and design of synthetic biological systems, and others.

Content:
Front Matter....Pages -
Phase Synchronization of Circadian Oscillators Induced by a Light-Dark Cycle and Extracellular Noise....Pages 1-7
Detecting RNA Sequences Using Two-Stage SVM Classifier....Pages 8-20
Frequency Synchronization of a Set of Cells Coupled by Quorum Sensing....Pages 21-27
A Stochastic Model for Prevention and Control of HIV/AIDS Transmission Dynamics....Pages 28-37
Simulation of Artificial Life of Bee’s Behaviors....Pages 38-45
Hybrid Processing and Time-Frequency Analysis of ECG Signal....Pages 46-57
Robust Stability of Human Balance Keeping....Pages 58-66
Modelling Pervasive Environments Using Bespoke and Commercial Game-Based Simulators....Pages 67-77
The Research of Artificial Animal’s Behavior Memory Based on Cognition....Pages 78-87
How to Ensure Safety Factors in the Development of Artificial Heart: Verified by the Usage of ”Modeling and Simulation” Technology....Pages 88-96
Parametric-Expression-Based Construction of Interior Features for Tissue Engineering Scaffold with Defect Bone....Pages 97-103
Computation of Uniaxial Modulus of the Normal and Degenerated Articular Cartilage Using Inhomogeneous Triphasic Model....Pages 104-110
Effect of the Plantar Ligaments Injury on the Longitudinal Arch Height of the Human Foot....Pages 111-119
Internet Living Broadcast of Medical Video Stream....Pages 120-128
Predicting Syndrome by NEI Specifications: A Comparison of Five Data Mining Algorithms in Coronary Heart Disease....Pages 129-135
Application of Image Processing and Finite Element Analysis in Bionic Scaffolds’ Design Optimizing and Fabrication....Pages 136-145
The Mechanical Properties of Bone Tissue Engineering Scaffold Fabricating Via Selective Laser Sintering....Pages 146-152
Informational Structure of Agrobacterium Tumefaciens C58 Genome....Pages 153-161
Feature Extraction for Cancer Classification Using Kernel-Based Methods....Pages 162-171
A New Hybrid Approach to Predict Subcellular Localization by Incorporating Protein Evolutionary Conservation Information....Pages 172-179
Support Vector Machine for Prediction of DNA-Binding Domains in Protein-DNA Complexes....Pages 180-187
Feature Extraction for Mass Spectrometry Data....Pages 188-196
An Improved Algorithm on Detecting Transcription and Translation Motif in Archaeal Genomic Sequences....Pages 197-207
Constructing Structural Alignment of RNA Sequences by Detecting and Assessing Conserved Stems....Pages 208-217
Iris Verification Using Wavelet Moments and Neural Network....Pages 218-226
Comprehensive Fuzzy Evaluation Model for Body Physical Exercise Risk....Pages 227-235
The Effect of Map Information on Brain Activation During a Driving Task....Pages 236-245
Worm 5: Pseudo-organics Computer and Natural Live System....Pages 246-253
Comparisons of Chemical Synapses and Gap Junctions in the Stochastic Dynamics of Coupled Neurons....Pages 254-263
Distinguish Different Acupuncture Manipulations by Using Idea of ISI....Pages 264-273
The Study on Internet-Based Face Recognition System Using PCA and MMD....Pages 274-283
Simulation of Virtual Human’s Mental State in Behavior Animation....Pages 284-291
Hemodynamic Analysis of Cerebral Aneurysm and Stenosed Carotid Bifurcation Using Computational Fluid Dynamics Technique....Pages 292-299
Active/Inactive Emotional Switching for Thinking Chain Extraction by Type Matching from RAS....Pages 300-306
Pattern Recognition for Brain-Computer Interfaces by Combining Support Vector Machine with Adaptive Genetic Algorithm....Pages 307-316
Improved Locally Linear Embedding by Cognitive Geometry....Pages 317-325
Predicting the Free Calcium Oxide Content on the Basis of Rough Sets, Neural Networks and Data Fusion....Pages 326-334
Classification of Single Trial EEG Based on Cloud Model for Brain-Computer Interfaces....Pages 335-343
The Modified Self-organizing Fuzzy Neural Network Model for Adaptability Evaluation....Pages 344-353
Predicting Functional Protein-Protein Interactions Based on Computational Methods....Pages 354-363
The Chaos Model Analysis Based on Time-Varying Fractal Dimension....Pages 364-369
Bi-hierarchy Medical Image Registration Based on Steerable Pyramid Transform....Pages 370-379
A Multiagent Quantum Evolutionary Algorithm for Global Numerical Optimization....Pages 380-389
Developing and Optimizing a Finite Element Model of Phalange Using CT Images....Pages 390-398
Reverse Engineering Methodology in Broken Skull Surface Model Reconstruction....Pages 399-405
Identification and Application of Nonlinear Rheological Characteristics of Oilseed Based on Artificial Neural Networks....Pages 406-413
Prediction of Death Rate of Breast Cancer Induced from Average Microelement Absorption with Neural Network....Pages 414-421
An Adaptive Classifier Based on Artificial Immune Network....Pages 422-428
Investigation of a Hydrodynamic Performance of a Ventricular Assist Device After Its Long-Term Use in Clinical Application....Pages 429-435
QSAR and Molecular Docking Study of a Series of Combretastatin Analogues Tubulin Inhibitors....Pages 436-444
A Software Method to Model and Fabricate the Defective Bone Repair Bioscaffold Using in Tissue Engineering....Pages 445-452
Using Qualitative Technology for Modeling the Process of Virus Infection....Pages 453-461
AOC-by-Self-discovery Modeling and Simulation for HIV....Pages 462-469
A Simulation Study on the Encoding Mechanism of Retinal Ganglion Cell....Pages 470-479
Modelling the MAPK Signalling Pathway Using a Two-Stage Identification Algorithm....Pages 480-491
Design and Path Planning for a Remote-Brained Service Robot....Pages 492-500
Adaptive Fuzzy Sliding Mode Control of the Model of Aneurysms of the Circle of Willis....Pages 501-506
Particle Swarm Optimization Applied to Image Vector Quantization....Pages 507-515
Face Detection Based on BPNN and Wavelet Invariant Moment in Video Surveillance....Pages 516-525
Efficient Topological Reconstruction for Medical Model Based on Mesh Simplification....Pages 526-535
Repetitive Motion Planning of Redundant Robots Based on LVI-Based Primal-Dual Neural Network and PUMA560 Example....Pages 536-545
Tensile Test to Ensure a Safety of Cannula Connection in Clinical Ventricular Assist Device (VAD)....Pages 546-552
A Reproduction of Inflow Restriction in the Mock Circulatory System to Evaluate a Hydrodynamic Performance of a Ventricular Assist Device in Practical Conditions....Pages 553-558
Back Matter....Pages -
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