Ebook: Computational Science – ICCS 2006: 6th International Conference, Reading, UK, May 28-31, 2006. Proceedings, Part II

The four-volume set LNCS 3991-3994 constitutes the refereed proceedings of the 6th International Conference on Computational Science, ICCS 2006, held in Reading, UK, in May 2006.

The main conference and its 32 topical workshops attracted over 1400 submissions. The 98 revised full papers and 29 revised poster papers of the main track presented together with 500 accepted workshop papers were carefully reviewed and selected for inclusion in the four volumes.

The papers span the whole range of computational science, with focus on the following major themes: tackling grand challenges problems; modelling and simulations of complex systems; scalable algorithms and tools and environments for computational science. Of particular interest were the following major recent developments in novel methods and modelling of complex systems for diverse areas of science, scalable scientific algorithms, advanced software tools, computational grids, advanced numerical methods, and novel application areas where the above novel models, algorithms and tools can be efficiently applied such as physical systems, computational and systems biology, environmental systems, fin

The four-volume set LNCS 3991-3994 constitutes the refereed proceedings of the 6th International Conference on Computational Science, ICCS 2006, held in Reading, UK, in May 2006.

The main conference and its 32 topical workshops attracted over 1400 submissions. The 98 revised full papers and 29 revised poster papers of the main track presented together with 500 accepted workshop papers were carefully reviewed and selected for inclusion in the four volumes.

The papers span the whole range of computational science, with focus on the following major themes: tackling grand challenges problems; modelling and simulations of complex systems; scalable algorithms and tools and environments for computational science. Of particular interest were the following major recent developments in novel methods and modelling of complex systems for diverse areas of science, scalable scientific algorithms, advanced software tools, computational grids, advanced numerical methods, and novel application areas where the above novel models, algorithms and tools can be efficiently applied such as physical systems, computational and systems biology, environmental systems, fin
Content:
Front Matter....Pages -
Numerical Modeling of Plasma – Flow Interaction....Pages 1-9
Numerical Methods for Reacting Gas Flow Simulations....Pages 10-17
Reduced Flame Kinetics Via Rate-Controlled Constrained Equilibrium....Pages 18-25
Flow Patterns in the Vicinity of Triple Line Dynamics Arising from a Local Surface Tension Model....Pages 26-33
A Multilevel-Multigrid Approach to Multiscale Electromagnetic Simulation....Pages 34-40
Scalable Simulation of Electromagnetic Hybrid Codes....Pages 41-49
Numerical Modelling of Poroviscoelastic Grounds in the Time Domain Using a Parallel Approach....Pages 50-57
Numerical Modeling of Tidal Effects and Hydrodymanics in the Po River Estuary....Pages 58-65
Adaptive Mesh Refinement and Domain Decomposition: A Framework to Study Multi-physical and Multi-scale Phenomena. First Application to Reacting Gas Flows....Pages 66-69
Time Splitting and Grid Refinement Methods in the Lattice Boltzmann Framework for Solving a Reaction-Diffusion Process....Pages 70-77
Mesoscopic Simulations of Unsteady Shear-Thinning Flows....Pages 78-85
A Multiphysics Model of Capillary Growth and Remodeling....Pages 86-93
Liquid Computations and Large Simulations of the Mammalian Visual Cortex....Pages 94-101
Which Meshes Are Better Conditioned: Adaptive, Uniform, Locally Refined or Locally Adjusted?....Pages 102-105
Parallel Simulation of Three–Dimensional Bursting with MPI and OpenMP....Pages 106-113
Numerical Simulation of Phase Transformations in Shape Memory Alloy Thin Films....Pages 114-121
A Virtual Test Facility for Simulating Detonation-Induced Fracture of Thin Flexible Shells....Pages 122-130
Data-Driven Inverse Modelling of Ionic Polymer Conductive Composite Plates....Pages 131-138
Exploiting Real-Time 3d Visualisation to Enthuse Students: A Case Study of Using Visual Python in Engineering....Pages 139-146
Involving Undergraduates in Computational Science and Engineering Research: Successes and Challenges....Pages 147-154
A Project Based Approach to Teaching Parallel Systems....Pages 155-160
Learning by Doing: Software Projects in CSE Education....Pages 161-168
Computational Math, Science, and Technology (CMST): A Strategy to Improve STEM Workforce and Pedagogy to Improve Math and Science Education....Pages 169-176
The School of Computational Science at Florida State University....Pages 177-184
Teaching the Foundations of Computational Science on the Undergraduate Level....Pages 185-192
Computational Science: An Intermingling of Science, Mathematics, and Computer Science....Pages 193-198
A Framework for Conceptually Modelling the Domain Knowledge of an Instructional System....Pages 199-206
Platyhelminthes Are [Re]constructed Recursively....Pages 207-214
Extensions for 3D Graphics Rendering Engine Used for Direct Tessellation of Spline Surfaces....Pages 215-222
An Evolution Computation Based Approach to Synthesize Video Texture....Pages 223-230
Deformation of Dynamic Surfaces....Pages 231-238
A New Smoothing Algorithm for Quadrilateral and Hexahedral Meshes....Pages 239-246
The Calculation of Parametric NURBS Surface Interval Values Using Neural Networks....Pages 247-254
Characterizing and Covering Some Subclasses of Orthogonal Polygons....Pages 255-262
Techniques for Computing Viewpoint Entropy of a 3D Scene....Pages 263-270
3D Object Repair Using 2D Algorithms....Pages 271-278
Extraction of Ridges-Valleys for Feature-Preserving Simplification of Polygonal Models....Pages 279-286
Multiresolution 3D Rendering on Mobile Devices....Pages 287-294
Multiresolution Remeshing Using Weighted Centroidal Voronoi Diagram....Pages 295-301
Metric 3D Surface Mesh Generation Using Delaunay Criteria....Pages 302-309
A Multiresolution Model for Non-photorealistic Rendering of Trees....Pages 310-317
Model Creation by Velocity Controlled Surface Deformation....Pages 318-325
Rendering of Unorganized Points with Octagonal Splats....Pages 326-333
Statistical Based Vectorization for Standard Vector Graphics....Pages 334-341
Robustly Computing Intersection Curves of Two Canal Surfaces with Quadric Decomposition....Pages 342-349
Triangle Strip Multiresolution Modelling Using Sorted Edges....Pages 350-357
Improvement Construction for Planar G2 Transition Curve Between Two Separated Circles....Pages 358-361
B-Spline Curve Fitting Using Dominant Points....Pages 362-366
Quality and Performance Evaluation of Ray-Space Interpolation for Free Viewpoint Video Systems....Pages 367-370
Framework for Adaptive Sampling of Point-Based Surfaces Using Geometry and Color Attributes....Pages 371-374
Normalizing Relational Database Schemas Using Mathematica....Pages 375-382
Extending Maple Capabilities for Solving and Displaying Inequalities....Pages 383-390
A Hybrid Approach for Normal Factorization of Polynomials....Pages 391-398
Computer Algebra for the Formation of Structural Matrices of Piezoceramic Finite Elements....Pages 399-406
Symbolic Analysis of Economical Models with Mathematica....Pages 407-413
Dynamic Load Balancing with MatlabMPI....Pages 414-421
Maple Implementation of the Chor-Rivest Cryptosystem....Pages 422-429
Development of TRIP: Fast Sparse Multivariate Polynomial Multiplication Using Burst Tries....Pages 430-437
A Symbolic Approach to Quantum Computation Simulation....Pages 438-445
Automated Discovery in Elementary Extrema Problems....Pages 446-453
Stabilizing Second-Order Linear Dynamic Systems Via Hybrid Output Feedback Controls....Pages 454-461
Computation of the Adjoint Matrix....Pages 462-469
MathBlackBoard as Effective Tool in Classroom....Pages 470-477
Finding Inefficiencies in OpenMP Applications Automatically with Periscope....Pages 478-485
Analysis of the Spatial and Temporal Locality in Data Accesses....Pages 486-489
A Performance Profile and Test Tool for Development of Embedded Software Using Various Report Views....Pages 490-493
SCE Toolboxes for the Development of High-Level Parallel Applications....Pages 494-501
Introducing the Open Trace Format (OTF)....Pages 502-509
Dynamic Instrumentation of Distributed Java Applications Using Bytecode Modifications....Pages 510-517
Fine-Grained Instrumentation and Monitoring of Legacy Applications in a Service-Oriented Environment....Pages 518-525
Monitoring of WS-Based Applications....Pages 526-533
Using Sequential Debugging Techniques with Massively Parallel Programs....Pages 534-541
Workflow for Integrated Object Detection in Collaborative Video Annotation Environments....Pages 542-548
RMIX: A Dynamic, Heterogeneous, Reconfigurable Communication Framework....Pages 549-556
Developing Collaborative Social Software....Pages 557-564
An Efficient and Reflective Event Filtering for Context-Awareness in Ubiquitous Computing....Pages 565-572
Creation and Control of Interactive Virtual Environments....Pages 573-580
Using Haptics to Improve Immersion in Virtual Environments....Pages 581-586
A Novel Navigation Algorithm for Locomotion Interfaces with Programmable Platforms....Pages 587-594
Efficient and Practical Algorithms for Deducing the History of Recombination in Populations....Pages 595-602
Chordal Graphs in Computational Biology – New Insights and Applications....Pages 603-609
Exemplar Longest Common Subsequence....Pages 610-617
Synonymous Codon Substitution Matrices....Pages 618-619
SEPA: Approximate Non-subjective Empirical p-Value Estimation for Nucleotide Sequence Alignment....Pages 620-621
Multiple Sequence Alignment by Ant Colony Optimization and Divide-and-Conquer....Pages 622-629
COMBAT: Search Rapidly for Highly Similar Protein-Coding Sequences Using Bipartite Graph Matching....Pages 630-637
Missing Values Estimation in Microarray Data with Partial Least Squares Regression....Pages 638-645
Boost Feature Subset Selection: A New Gene Selection Algorithm for Microarray Dataset....Pages 646-653
A Hybrid Feature Selection Approach for Microarray Gene Expression Data....Pages 654-661
A Self-supervised Learning Framework for Classifying Microarray Gene Expression Data....Pages 662-669
Pooling Evidence to Identify Cell Cycle–Regulated Genes....Pages 670-677
Discovering Sequence-Structure Patterns in Proteins with Variable Secondary Structure....Pages 678-685
Clustering Support Vector Machines and Its Application to Local Protein Tertiary Structure Prediction....Pages 686-693
Extracting Protein-Protein Interactions from the Literature Using the Hidden Vector State Model....Pages 694-701
A Multilevel Approach to Identify Functional Modules in a Yeast Protein-Protein Interaction Network....Pages 702-709
Towards Detecting Protein Complexes from Protein Interaction Data....Pages 710-717
High-Throughput SNP Genotyping by SBE/SBH....Pages 718-725
Tag SNP Selection Based on Multivariate Linear Regression....Pages 726-733
Minimum Multicolored Subgraph Problem in Multiplex PCR Primer Set Selection and Population Haplotyping....Pages 734-741
Phasing of 2-SNP Genotypes Based on Non-random Mating Model....Pages 742-749
Event Models for Tumor Classification with SAGE Gene Expression Data....Pages 750-757
Genomes Containing Duplicates Are Hard to Compare....Pages 758-766
Rearrangement of Noisy Genomes....Pages 767-774
Simple Reconstruction of Binary Near-Perfect Phylogenetic Trees....Pages 775-782
Reconstructing Ancestor-Descendant Lineages from Serially-Sampled Data: A Comparison Study....Pages 783-790
Robustness of Greedy Type Minimum Evolution Algorithms....Pages 791-798
Space and Time Efficient Algorithms for Planted Motif Search....Pages 799-806
Predictability of Rules in HIV-1 Protease Cleavage Site Analysis....Pages 807-814
Statistical Feature Selection from Chaos Game Representation for Promoter Recognition....Pages 815-821
Blue Matter: Strong Scaling of Molecular Dynamics on Blue Gene/L....Pages 822-829
DigitalTree: A Tool for Displaying Biological Data in Tree Structure....Pages 830-837
HiSP: A Probabilistic Data Mining Technique for Protein Classification....Pages 838-845
Cross-Ontological Analytics: Combining Associative and Hierarchical Relations in the Gene Ontologies to Assess Gene Product Similarity....Pages 846-854
A GO-Based Method for Assessing the Biological Plausibility of Regulatory Hypotheses....Pages 855-862
Delays in Biological Regulatory Networks (BRN)....Pages 863-870
Phase Transitions in Gene Knockdown Networks of Transitive RNAi....Pages 871-878
Compile-Time Energy Optimization for Parallel Applications in On-Chip Multiprocessors....Pages 879-886
Using SBASCO to Solve Reaction-Diffusion Equations in Two-Dimensional Irregular Domains....Pages 887-894
Higher Order Flattening....Pages 895-903
Combining Measurement and Stochastic Modelling to Enhance Scheduling Decisions for a Parallel Mean Value Analysis Algorithm....Pages 904-911
Co-Array Collectives: Refined Semantics for Co-Array Fortran....Pages 912-919
An Approach to Buffer Management in Java HPC Messaging....Pages 920-928
A Low Complexity and Robust Frequency Offset Estimation Algorithm for OFDM-Based WLAN Systems....Pages 929-936
Simplified Signal Detection for BLAST Architecture with ML and DFE Detectors....Pages 937-944
Scenario Decomposition Based Analysis of Next Generation Mobile Services....Pages 945-952
A Power Saving Scheme for Integrated WLAN and Cellular Networks....Pages 953-960
The Optimal Subchannel and Bit Allocation Problem for OFDM....Pages 961-968
Bluetooth Broadcasting Performance: Reliability and Throughput....Pages 969-976
An Optimized Two Factor Authenticated Key Exchange Protocol in PWLANs....Pages 977-984
Adaptive Clustering with Virtual Subnets Support in Ad Hoc Networks....Pages 985-991
A Service Management Architecture for NEMO in IPv4 and IPv6 Networks....Pages 992-995
Overlapped Detection Via Approximate Entropy Estimation Against Flooding Attack in Mobile Sensor Networks....Pages 996-999
Implementation of Next Generation Mobile Service: The Context-Aware Follow-Me Service....Pages 1000-1007
Multi-piconet Formation to Increase Channel Utilization in IEEE 802.15.3 High-Rate WPAN....Pages 1008-1015
Unencapsulated Mobile Multicast Routing for Next Generation Video Networks....Pages 1016-1023
Channel Estimation of High Rate WPAN System with Diversity Technique....Pages 1024-1032
A Timestamp Tree-Based Cache Invalidation Report Scheme in Mobile Computing Environments....Pages 1033-1040
Clustering Versus Evenly Distributing Energy Dissipation in Wireless Sensor Routing for Prolonging Network Lifetime....Pages 1041-1049
On the Effect of Heterogeneous Traffic Sources on the Network Availability for Wireless Sensor Grids....Pages 1050-1057
Selective Handover Technique on Multihomed Mobile Network Environment....Pages 1058-1064
Collaborative Trust-Based Shortest Secure Path Discovery in Mobile Ad Hoc Networks....Pages 1065-1068
An Efficient Neighbor Knowledge Based Broadcasting for Mobile Ad Hoc Networks....Pages 1069-1072
Maximum Lifetime Paths for the High Packet Delivery Ratio Using Fast Recovery in a Mobile Ad Hoc Network....Pages 1073-1080
Synonymous Codon Substitution Matrices....Pages 1081-1088
Compile-Time Energy Optimization for Parallel Applications in On-Chip Multiprocessors....Pages 1089-1096
Back Matter....Pages 1097-1100
....Pages 1101-1104