Ebook: Phylogenetic trees made easy: a how-to manual

Read me first! -- Tutorial : estimate a tree! -- Acquiring the sequences -- Aligning the sequences -- Major methods for estimating phylogenetic trees -- Neighbor joining trees -- Drawing phylogenetic trees -- Parsimony -- Maximum likelihood -- Bayesian inference of trees using BEAST -- Which method should you use? -- Working with various computer platforms -- Phylogenetic networks -- Minimum spanning trees -- Time trees -- Reconstructing ancestral sequences -- Detecting adaptive evolution -- Estimating phylogenetic trees from whole genome sequences -- Some final advice: learn to program.